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cubfits (version 0.1-2)

Cedric Plot Utilities: Cedric Plot Utilities

Description

This utility function provides basic plots by Cedric.

Usage

plotPTraces(pMat, ...) plotExpectedPhiTrace(phiMat, ...) plotCUB(reu13.df.obs, bMat = NULL, bVec = NULL, phi.bin, n.use.samples = 2000, main = "CUB", model.label = c("True Model"), model.lty = 1, weightedCenters = TRUE)
plotTraces(bMat, names.aa, param = c("logmu", "deltaeta", "deltat"), main = "AA parameter trace")

Arguments

reu13.df.obs
under development
bVec
a parameter vector
phi.bin
phi values to bin for comparison
n.use.samples
under development
main
Main name for plotTraces
model.label
Name of model
model.lty
line type for model
weightedCenters
if centers are weighted.
names.aa
List of amino acids used for estimation
param
select to plot parameter trace for either log(mu) values or delta t
phiMat
phi matrix from the output of "cubmultichain", "cubsinglechain", "cubfits", "cubappr", or "cubpred"
bMat
b matrix from the output of "cubmultichain", "cubsinglechain", "cubfits", "cubappr", or "cubpred"
pMat
p matrix from the output of "cubmultichain", "cubsinglechain", "cubfits", "cubappr", or "cubpred"
...
other ploting options

Value

under development

Details

under development

References

https://github.com/clandere/cubfits/

See Also

plot

Examples

Run this code
## Not run: 
# suppressMessages(library(cubfits, quietly = TRUE))
# 
# ## End(Not run)

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